Install

Installing in a conda environment (recommended)

We highly recommend installing SCENIC+ in a new conda environment.

Create new environment:

$ conda create --name scenicplus python=3.11

Install SCENIC+ in environment:

$ conda activate scenicplus
$ git clone https://github.com/aertslab/scenicplus
$ cd scenicplus
$ git checkout development
$ pip install .

Checking version

To check your SCENIC+ version

>>> import scenicplus
>>> scenicplus.__version__
'1.0a1'